Invoking:
  getsize MOA24_loss_diff.fa 1> $metrics
Finished invoke:
  name: count_primary_seqs  status: 0  time: 0.007196
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 0 -pseudo 1 MOA24_loss_diff.fa ./background
Finished invoke:
  name: bg  status: 0  time: 0.005463
Invoking:
  streme --verbosity 1 --oc streme_out -dna --minw 6 --maxw 15 --order 0 --bfile ./background --seed 0 --align center --time 4740 --totallength 4000000 --evalue --thresh 0.05 --p MOA24_loss_diff.fa
Finished invoke:
  name: streme  status: 0  time: 5.978651
Invoking:
  meme -oc meme_out -mod zoops -minw 6 -maxw 15 -bfile ./background -markov_order 0 -seed 0 -dna -revcomp -evt 0.05 -nostatus -time 7137 -searchsize 100000 MOA24_loss_diff.fa
Finished invoke:
  name: meme  status: 0  time: 195.66083
Invoking:
  sea --verbosity 1 --oc sea_disc_out --qvalue --thresh 1 --order 0 --bfile ./background --seed 0 --align center --motif-pseudo 0.01 --noseqs --m meme_out/meme.xml --m streme_out/streme.xml --p MOA24_loss_diff.fa
Finished invoke:
  name: sea_disc  status: 0  time: 0.080732
Invoking:
  sea --verbosity 1 --oc sea_out --thresh 0.05 --order 0 --bfile ./background --seed 0 --align center --motif-pseudo 0.01 --m meme_out/meme.xml --m streme_out/streme.xml --m db/motif_databases/HUMAN/HOCOMOCOv11_core_HUMAN_mono_meme_format.meme --p MOA24_loss_diff.fa
Finished invoke:
  name: sea  status: 0  time: 3.693946
Invoking:
  sea --verbosity 1 --oc distr_out --pvalue --thresh 1 --hofract 0 --order 0 --bfile ./background --seed 0 --motif-pseudo 0.01 --no-pgc --p MOA24_loss_diff.fa --m ./combined.meme
Finished invoke:
  name: distr_sea  status: 0  time: 0.401849
Invoking:
  tomtom -verbosity 1 -oc streme_tomtom_out -min-overlap 5 -dist ed -evalue -thresh 1 -no-ssc streme_out/streme.xml db/motif_databases/HUMAN/HOCOMOCOv11_core_HUMAN_mono_meme_format.meme
Finished invoke:
  name: streme_tomtom  status: 0  time: 1.408096
Invoking:
  tomtom -verbosity 1 -oc meme_tomtom_out -min-overlap 5 -dist ed -evalue -thresh 1 -no-ssc meme_out/meme.xml db/motif_databases/HUMAN/HOCOMOCOv11_core_HUMAN_mono_meme_format.meme
Finished invoke:
  name: meme_tomtom  status: 0  time: 1.688788
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 ./combined.meme ./combined.meme 1> ./motif_alignment.txt
Finished invoke:
  name: align_tomtom  status: 0  time: 1.301391
Invoking:
  fimo --verbosity 1 --oc fimo_out_1 --bgfile ./background --motif 1-RVAGRAAAWR streme_out/streme.xml MOA24_loss_diff.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.050095
Invoking:
  fimo --verbosity 1 --oc fimo_out_2 --bgfile ./background --motif 2-ATSGAATGGAATSGA streme_out/streme.xml MOA24_loss_diff.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.046207
Invoking:
  fimo --verbosity 1 --oc fimo_out_3 --bgfile ./background --motif 3-TGAAAACA streme_out/streme.xml MOA24_loss_diff.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.050228
Invoking:
  fimo --verbosity 1 --oc fimo_out_4 --bgfile ./background --motif CCDCCTCDGCCTCCC meme_out/meme.xml MOA24_loss_diff.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.045639
Invoking:
  fimo --verbosity 1 --oc fimo_out_5 --bgfile ./background --motif 4-AKGCMT streme_out/streme.xml MOA24_loss_diff.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.036595
Writing output
Invoking:
  xstreme_html_to_tsv ./xstreme.html ./xstreme.tsv "xstreme --oc . --time 240 --streme-totallength 4000000 --meme-searchsize 100000 --dna --order 0 --evt 0.05 --minw 6 --maxw 15 --align center --meme-mod zoops --m db/motif_databases/HUMAN/HOCOMOCOv11_core_HUMAN_mono_meme_format.meme --p MOA24_loss_diff.fa" 5.5.5 "Thu Sep 14 08\:48\:04 2023 +1000"
Finished invoke:
  name: summary  status: 0  time: 0.151616
Done
